3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12262

Details:

PFam ID : PF12262

PFam Domain Description : Bacterial virulence factor lipase N-terminal

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 87

Average sequence length: 232.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12262	Q1Z527_PHOPR_1_245	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12262	F0S1P3_DESTD_1_232	98.8

Sequence based PCA Plot of the family - PF12262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=261 Length=8
Motif4 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay