3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12261

Details:

PFam ID : PF12261

PFam Domain Description : Thermostable hemolysin

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 74

Average sequence length: 172.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12261	D0CPJ5_9RHOB_3_103	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12261	A6F7D6_9GAMM_10_194	100

Sequence based PCA Plot of the family - PF12261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=117 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay