3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12256

Details:

PFam ID : PF12256

PFam Domain Description : Insecticide toxin TcdB middle/N-terminal region

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 132

Average sequence length: 166.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12256	A3YBF3_9GAMM_835_1008	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12256	E2NCX0_9BACE_952_1139	99.2

Sequence based PCA Plot of the family - PF12256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay