3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12255

Details:

PFam ID : PF12255

PFam Domain Description : Insecticide toxin TcdB middle/C-terminal region

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 64

Average sequence length: 137.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12255	D8NIF7_RALSO_19_84	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12255	B3EU05_AMOA5_938_1093	98.4

Sequence based PCA Plot of the family - PF12255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=36 Length=8
Motif3 Start=101 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay