3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12254

Details:

PFam ID : PF12254

PFam Domain Description : DNA polymerase alpha subunit p180 N terminal

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 116

Average sequence length: 64.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12254	Q59J89_TRASC_2_44	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12254	F0W8W3_9STRA_18_92	100

Sequence based PCA Plot of the family - PF12254 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=67 Length=8
Motif4 Start=20 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay