3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12253

Details:

PFam ID : PF12253

PFam Domain Description : Chromatin assembly factor 1 subunit A

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 137

Average sequence length: 79.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12253	F0XXM6_9STRA_343_429	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12253	F0XXM6_9STRA_343_429	99.2

Sequence based PCA Plot of the family - PF12253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay