3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12252

Details:

PFam ID : PF12252

PFam Domain Description : Dot/Icm substrate protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 36

Average sequence length: 778.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12252	D1RII6_LEGLO_540_1502	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12252	E1Y2F2_LEGPN_293_566	100

Sequence based PCA Plot of the family - PF12252 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=274 Length=8
Motif2 Start=76 Length=8
Motif3 Start=58 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay