3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12250

Details:

PFam ID : PF12250

PFam Domain Description : Arabinofuranosyltransferase N terminal

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 44

Average sequence length: 394.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12250	Q4JY71_CORJK_32_490	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12250	Q4JY71_CORJK_32_490	100

Sequence based PCA Plot of the family - PF12250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay