3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12249

Details:

PFam ID : PF12249

PFam Domain Description : Arabinofuranosyltransferase A C terminal

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 40

Average sequence length: 173.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12249	Q4JY71_CORJK_495_680	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12249	Q4JY71_CORJK_495_680	100

Sequence based PCA Plot of the family - PF12249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=11
Motif2 Start=74 Length=11
Motif3 Start=64 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay