3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12248

Details:

PFam ID : PF12248

PFam Domain Description : Farnesoic acid 0-methyl transferase

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 151

Average sequence length: 98.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12248	D6WUA1_TRICA_743_818	55.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12248	F0WKX3_9STRA_94_205	100

Sequence based PCA Plot of the family - PF12248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=69 Length=8
Motif2 Start=16 Length=17
Motif3 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay