3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12247

Details:

PFam ID : PF12247

PFam Domain Description : Temperature dependent protein affecting M2 dsRNA replication

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 67

Average sequence length: 86.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12247	B9Q6X4_TOXGO_312_359	26.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12247	E6ZMQ8_9BASI_361_454	100

Sequence based PCA Plot of the family - PF12247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay