3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12246

Details:

PFam ID : PF12246

PFam Domain Description : Temperature dependent protein affecting M2 dsRNA replication

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 82

Average sequence length: 230.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12246	Q6C735_YARLI_491_708	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12246	E3KN57_PUCGT_514_766	100

Sequence based PCA Plot of the family - PF12246 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=179 Length=8
Motif3 Start=15 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay