3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12245

Details:

PFam ID : PF12245

PFam Domain Description : Bacterial Ig-like domain (group 3)

Number of Sequence in 50% Dataset : 266

Number of Sequence in Full Dataset : 540

Average sequence length: 38.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12245	D5VG75_CAUST_8_57	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12245	Q1J0Q4_DEIGD_839_896	98.5

Sequence based PCA Plot of the family - PF12245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=18
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay