3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12242

Details:

PFam ID : PF12242

PFam Domain Description : NAD(P)H binding domain of trans-2-enoyl-CoA reductase

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 160

Average sequence length: 76.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12242	Q026C3_SOLUE_2_42	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12242	A6G626_9DELT_13_92	100

Sequence based PCA Plot of the family - PF12242 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=71 Length=8
Motif3 Start=48 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay