3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12241

Details:

PFam ID : PF12241

PFam Domain Description : Trans-2-enoyl-CoA reductase catalytic region

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 158

Average sequence length: 234.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12241	A3GTH6_VIBCH_1_166	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12241	A6G626_9DELT_99_340	100

Sequence based PCA Plot of the family - PF12241 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=150 Length=8
Motif3 Start=129 Length=8
Motif4 Start=43 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay