3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12238

Details:

PFam ID : PF12238

PFam Domain Description : Merozoite surface antigen 2c

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 49

Average sequence length: 172.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12238	B7U194_BABBO_63_243	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12238	Q95UG4_BABBO_69_255	100

Sequence based PCA Plot of the family - PF12238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=88 Length=8
Motif4 Start=191 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay