3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12233

Details:

PFam ID : PF12233

PFam Domain Description : Human adult T cell leukemia/lymphoma virus protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 49.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12233	E3VWG6_9ASCI_510_558	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12233	Q6L7K6_9DELA_1_99	100

Sequence based PCA Plot of the family - PF12233 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay