3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12232

Details:

PFam ID : PF12232

PFam Domain Description : Myogenic determination factor 5

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 72

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12232	E3VWG6_9ASCI_510_558	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12232	Q700F5_HIPHI_157_190	100

Sequence based PCA Plot of the family - PF12232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=61 Length=14
Motif3 Start=16 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay