3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12225

Details:

PFam ID : PF12225

PFam Domain Description : Methylene-tetrahydrofolate reductase C terminal

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 121

Average sequence length: 92.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12225	A6DQ44_9BACT_426_487	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12225	D1N536_9BACT_381_476	100

Sequence based PCA Plot of the family - PF12225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=33

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay