3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12221

Details:

PFam ID : PF12221

PFam Domain Description : Bacterial membrane protein N terminal

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 236

Average sequence length: 54.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12221	Q8D316_WIGBR_6_61	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12221	Q8D316_WIGBR_6_61	95.3

Sequence based PCA Plot of the family - PF12221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay