3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12220

Details:

PFam ID : PF12220

PFam Domain Description : U1 small nuclear ribonucleoprotein of 70kDa MW N terminal

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 124

Average sequence length: 92.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12220	D7L4B9_ARALL_200_247	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12220	E6ZR72_9BASI_1_118	100

Sequence based PCA Plot of the family - PF12220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay