3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12215

Details:

PFam ID : PF12215

PFam Domain Description : beta-Glucocerebrosidase 2 N terminal

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 187

Average sequence length: 287.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12215	A5KY63_9GAMM_96_416	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12215	C1N2V6_MICPC_77_448	100

Sequence based PCA Plot of the family - PF12215 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=47 Length=8
Motif2 Start=16 Length=8
Motif3 Start=150 Length=8
Motif4 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay