3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12214

Details:

PFam ID : PF12214

PFam Domain Description : Cell cycle regulated microtubule associated protein

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 68

Average sequence length: 130.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12214	A9SFE6_PHYPA_289_413	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12214	F1NW64_CHICK_333_509	98.5

Sequence based PCA Plot of the family - PF12214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay