3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12211

Details:

PFam ID : PF12211

PFam Domain Description : Low molecular weight S layer protein N terminal

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 28

Average sequence length: 212.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12211	Q45SQ7_CLODI_1_130	64.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12211	D0VZY0_CLODI_27_284	100

Sequence based PCA Plot of the family - PF12211 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay