3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12209

Details:

PFam ID : PF12209

PFam Domain Description : Leucine permease transcriptional regulator helical domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 19

Average sequence length: 74.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12209	E0P0H2_9FIRM_67_166	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12209	C4QVL1_PICPG_652_740	100

Sequence based PCA Plot of the family - PF12209 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay