3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12206

Details:

PFam ID : PF12206

PFam Domain Description : Domain of unknown function (DUF3599)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 14

Average sequence length: 108.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12206	A5ZPY7_9FIRM_1_113	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12206	Q92CB5_LISIN_1_118	100

Sequence based PCA Plot of the family - PF12206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=30
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay