3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12205

Details:

PFam ID : PF12205

PFam Domain Description : G protein-coupled receptor kinase-interacting protein 1 C term

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 38

Average sequence length: 115.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12205	A7RPG4_NEMVE_9_277	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12205	Q1RLG9_CIOIN_625_747	100

Sequence based PCA Plot of the family - PF12205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay