3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12204

Details:

PFam ID : PF12204

PFam Domain Description : Domain of unknown function (DUF3598)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 78

Average sequence length: 216.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12204	A7RPG4_NEMVE_9_277	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12204	B1XJP3_SYNP2_3_274	100

Sequence based PCA Plot of the family - PF12204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay