3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12203

Details:

PFam ID : PF12203

PFam Domain Description : Glutamine rich N terminal domain of histone deacetylase 4

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 88.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12203	BIK_HUMAN_1_159	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12203	C3Z354_BRAFL_12_99	100

Sequence based PCA Plot of the family - PF12203 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay