3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12202

Details:

PFam ID : PF12202

PFam Domain Description : Oxidative-stress-responsive kinase 1 C terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 46

Average sequence length: 34.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12202	BIK_HUMAN_1_159	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12202	E1FZ73_LOALO_457_486	100

Sequence based PCA Plot of the family - PF12202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay