3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12199

Details:

PFam ID : PF12199

PFam Domain Description : Extracellular fibrinogen binding protein C terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 4

Average sequence length: 47.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12199	TUBE_MYCTU_54_87	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12199	D6LWX4_STAAU_101_165	100

Sequence based PCA Plot of the family - PF12199 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay