3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12186

Details:

PFam ID : PF12186

PFam Domain Description : Acyl-CoA dehydrogenase C terminal

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 46

Average sequence length: 109.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12186	D8DYC7_PREBR_451_504	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12186	E4M8I0_9BACT_452_566	100

Sequence based PCA Plot of the family - PF12186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay