3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12185

Details:

PFam ID : PF12185

PFam Domain Description : Nup358/RanBP2 E3 ligase domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 20

Average sequence length: 57.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12185	A9UM83_XENTR_551_611	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12185	A9UM83_XENTR_551_611	100

Sequence based PCA Plot of the family - PF12185 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay