3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12182

Details:

PFam ID : PF12182

PFam Domain Description : Bacterial lipoprotein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 30

Average sequence length: 76.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12182	B3F3G2_BACTK_1_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12182	E1LJR9_STRMT_37_120	82

Sequence based PCA Plot of the family - PF12182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay