3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12180

Details:

PFam ID : PF12180

PFam Domain Description : TSG101 and ALIX binding domain of CEP55

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 17

Average sequence length: 32.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12180	D9S363_THEOJ_5_151	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12180	Q502I3_DANRE_164_198	100

Sequence based PCA Plot of the family - PF12180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay