3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12178

Details:

PFam ID : PF12178

PFam Domain Description : Chromosome passenger complex (CPC) protein INCENP N terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 13

Average sequence length: 34.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12178	D9S363_THEOJ_5_151	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12178	INCEB_XENLA_4_41	100

Sequence based PCA Plot of the family - PF12178 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay