3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12176

Details:

PFam ID : PF12176

PFam Domain Description : Methanol-cobalamin methyltransferase B subunit

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 25

Average sequence length: 411.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12176	D9S363_THEOJ_5_151	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12176	E3GDQ6_EUBLK_1_457	100

Sequence based PCA Plot of the family - PF12176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay