3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12171

Details:

PFam ID : PF12171

PFam Domain Description : Zinc-finger double-stranded RNA-binding

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 579

Average sequence length: 26.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12171	C1C169_9MAXI_279_305	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12171	D6WZ24_TRICA_201_225	82

Sequence based PCA Plot of the family - PF12171 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay