3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12168

Details:

PFam ID : PF12168

PFam Domain Description : DNA polymerase III subunits tau domain IV DnaB-binding

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 77

Average sequence length: 83.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12168	D6GFQ0_9ENTR_1_57	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12168	D6GFQ0_9ENTR_1_57	100

Sequence based PCA Plot of the family - PF12168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay