3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12165

Details:

PFam ID : PF12165

PFam Domain Description : Domain of unknown function (DUF3594)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 90

Average sequence length: 119.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12165	A5B4C8_VITVI_64_147	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12165	B8AUC5_ORYSI_15_73	97.7

Sequence based PCA Plot of the family - PF12165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=44 Length=8
Motif2 Start=7 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay