3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12163

Details:

PFam ID : PF12163

PFam Domain Description : DNA replication regulator

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 37

Average sequence length: 166.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12163	E5ZFU7_CAMJE_1_105	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12163	C3XF24_9HELI_1_181	100

Sequence based PCA Plot of the family - PF12163 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=157 Length=8
Motif3 Start=55 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay