3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12161

Details:

PFam ID : PF12161

PFam Domain Description : HsdM N-terminal domain

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 1578

Average sequence length: 132.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12161	C2CPV0_CORST_6_85	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12161	E0TLL4_MYCHH_20_200	92.2

Sequence based PCA Plot of the family - PF12161 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=71 Length=8
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay