3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12155

Details:

PFam ID : PF12155

PFam Domain Description : NADH dehydrogenase subunit 2 N-terminal

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 18

Average sequence length: 83.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12155	Q6CD12_YARLI_291_367	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12155	A0S833_9CNID_1_84	100

Sequence based PCA Plot of the family - PF12155 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay