3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12154

Details:

PFam ID : PF12154

PFam Domain Description : Glycoprotein B N-terminal antigenic domain of HCMV

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 8

Average sequence length: 31.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12154	Q6CD12_YARLI_291_367	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12154	Q68774_HCMV_31_66	100

Sequence based PCA Plot of the family - PF12154 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay