3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12153

Details:

PFam ID : PF12153

PFam Domain Description : LPS binding domain of CAP18 (C terminal)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 19

Average sequence length: 26.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12153	Q6CD12_YARLI_291_367	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12153	F1SKM6_PIG_137_166	100

Sequence based PCA Plot of the family - PF12153 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay