3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12152

Details:

PFam ID : PF12152

PFam Domain Description : Eukaryotic translation initiation factor 4G1

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 58

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12152	Q6CD12_YARLI_291_367	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12152	E7R6T1_PICAD_377_451	100

Sequence based PCA Plot of the family - PF12152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay