3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12149

Details:

PFam ID : PF12149

PFam Domain Description : Herpes simplex virus virion protein 16 C terminal

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 5

Average sequence length: 24

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12149	B7PI04_IXOSC_19_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12149	VP16_HHV2H_461_490	100

Sequence based PCA Plot of the family - PF12149 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay