3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12145

Details:

PFam ID : PF12145

PFam Domain Description : Eukaryotic Mediator 12 subunit domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 44

Average sequence length: 324.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12145	F0ZIB5_DICPU_582_730	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12145	B7PQ53_IXOSC_275_711	100

Sequence based PCA Plot of the family - PF12145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=105 Length=8
Motif2 Start=306 Length=8
Motif3 Start=197 Length=8
Motif4 Start=297 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay