3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12139

Details:

PFam ID : PF12139

PFam Domain Description : Adenosine-5'-phosphosulfate reductase beta subunit

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 142

Average sequence length: 84.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12139	F0Y0A6_9STRA_24_297	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12139	D1KAW0_9GAMM_59_111	100

Sequence based PCA Plot of the family - PF12139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=27 Length=8
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay