3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12133

Details:

PFam ID : PF12133

PFam Domain Description : Open reading frame 6 from SARS coronavirus

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 3

Average sequence length: 41

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12133	A2Q084_9VIRU_1_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12133	Q5DIC0_CVHSA_1_62	100

Sequence based PCA Plot of the family - PF12133 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay